This particular scandal was worse than you think. It wasn't just that she was suspected of sleeping with her bodyguard, but it's that she was abusing her position to make young female staffers communicate work stuff through her father or through her husband (neither of whom were government employees) so that they could sexually harass them. It's fucked up.
If it were just shitting where she ate, it wouldn't even register in this administration. This was worse.
How does that change the current law, though?
I'd be in favor of a rule that explains that organizing into associations doesn't change the rights of the individuals who form the association, but also that the association would only have rights that relate to the actual purpose of forming the association in the first place (whether it's a corporation, LLC, partnership, joint venture, other unincorporated associations).
So a church gets religious freedom. But a sandwich shop does not. A newspaper gets freedom of speech and may exercise editorial discretion on what goes on its pages. A telephone company does not, and cannot discriminate against the viewpoints expressed over its phone lines.
There are trickier issues: can a government ban halal slaughter, and would a Muslim-owned butcher shop be entitled to a religious exemption (if, assuming, individuals were granted that exemption)? I'd argue you have to look to the nature of the business or organization to determine whether that particular right applies to that organization, so the butcher shop can invoke the religion of the human butcher, and possibly even the human customers who want to buy halal meat.
But the framework makes sense to me, and is closely related to the principle of organizational standing, where something like a nonprofit association of apple growers can sue on behalf of apple grower rights, despite not being an organization that actually directly grows apples. That's how corporate rights should work: look to the reason for incorporating and the nature of the organization, and how it relates to the nature of the right at issue.